PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015909-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 149aa    MW: 16720.7 Da    PI: 5.5736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015909-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000472183955
                   TCHHHHHHHHHHHHHHH CS
            HLH 39 sKaeiLekAveYIksLq 55
                   +Ka++L  A++Y+k+Lq
  NNU_015909-RA  2 DKASVLGDAIKYLKQLQ 18
                   8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-5133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-5130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDKASVLGDA IKYLKQLQER VKILEEQTVK KRVESVVLVK RSHISADDDN SSDENNLDGG  60
RSDDEAALPE IEARVSDKDV LIRVHCEKQK GVVAKALAEI EKLHLTVVNT QQQRHPLWEI  120
SSQYHHSCCD GTRVLHESEG SCEASPFSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270356.11e-106PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0723e-34BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A061DHY32e-46A0A061DHY3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGSolyc01g106460.2.13e-44(Solanum lycopersicum)
STRINGPGSC0003DMT4000130743e-43(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-31bHLH family protein